Fasta file format is a common file type for distributing proteome information, especially those obtained from Uniprot. While Matlab could automatically read fasta files using the built-in function, fastaread, important information such as… Mutations in a gene can have profound effects on the function of a protein. This analysis tool highlights the location of a gene location (i.e., the site of a SNP). Generate high-order Markov random protein sequences - alexviiia/RandProt Download files from NCBI Entrez by accession. Contribute to kblin/ncbi-acc-download development by creating an account on GitHub. A collection of scripts developed to interact with fasta, fastq and sam/bam files. - jimhester/fasta_utilities The .fasta file extension is used to describe files that has something to do with nucleic acid, DNA and protein sequences. Fasta files of these sequences are also available from our Pan Genome Search and Data Download page.
Fasta format sequences of Gnomon protein models annotated on the genome assembly. The Fasta title is the Gnomon identifier for the protein model (>gnl|Gnomon|XXX.p). In the mapping dialog, check the radio button next to "virulence_proteins.fasta" to select the protein set that should be the query. AFproject is a free service for objective performance benchmark of alignment-free sequence comparison tools. Fast Relative Uniqueness fInder for proTein sequences - smortezah/fruit Contribute to RabadanLab/pamler development by creating an account on GitHub. Fast taxonomic classification of metagenomic sequencing reads using a protein reference database - bioinformatics-centre/kaiju
In the mapping dialog, check the radio button next to "virulence_proteins.fasta" to select the protein set that should be the query. AFproject is a free service for objective performance benchmark of alignment-free sequence comparison tools. Fast Relative Uniqueness fInder for proTein sequences - smortezah/fruit Contribute to RabadanLab/pamler development by creating an account on GitHub. Fast taxonomic classification of metagenomic sequencing reads using a protein reference database - bioinformatics-centre/kaiju Plant Transcription factor & Protein Kinase Identifier and Classifier - FeiLab/iTAK
Protein Current C. elegans protein data Current C. briggsae protein data Current C. remanei protein data Current C. brenneri protein data Current C. japonica protein data Current P. Therefore, in addition to the protein domain classfication according to the Pfam database, UProC can, in principle, also provide the detection of KEGG Orthologs. MP3vec : A Transferable Feature Representation Method for Protein Sequences - sanketx/MP3vec kallisto indexing and tag extraction. Contribute to jasegehring/kite development by creating an account on GitHub. Tools for updating and maintaining Biogrid annotation resources for use with a variety of projects. - Biogrid/Biogrid-Annotation
Top Level · FASTA Sequence - All Types · EST Assemblies (PUT) · Genome Sequences PlantGDB downloads all Viridiplantae plant sequence data (GenBank and by BLASTX the unique transcript sequences against UniProt protein database. Directories contain MySQL table structures (*.sql files) and table data (*.txt
